369 datasets found

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome and F1/F2 cleavage.

A simulation of Bovine Serum Albumin [pdbid 3V03] in water (Tip5P) with amino acid protonation as to mimic pH 7 at room temperature without counterions.

A simulation of Bovine Serum Albumin [pdbid 3V03] in water (Tip5P) with amino acid protonation as to mimic pH 7 at room temperature without counterions.

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with amino acid protonation as to mimic pH 7 (pre-fusion).

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with amino acid protonation as to mimic pH 7 (pre-fusion).

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with amino acid protonation as to mimic pH 7 (pre-fusion).

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A simulation of the SARS-CoV-2 fusion protein [pdbid 6vsb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A simulation of Bovine Serum Albumin [pdbid 3V03] in water (spc/E) with amino acid protonation as to mimic pH 7 at room temperature without counterions.

A simulation of Bovine Serum Albumin [pdbid 3V03] in water (spc/E) with amino acid protonation as to mimic pH 7 at room temperature without counterions.

A simulation of Bovine Serum Albumin [pdbid 3V03] in water (spc/E) with amino acid protonation as to mimic pH 7 at room temperature without counterions.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 7 physiological conditions.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 7 physiological conditions.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 7 physiological conditions.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A simulation of the Hendra virus fusion protein [pdbid 5ejb] in water with complete amino acid protonation as to mimic pH 3 in the late endosome/ lysosome.

A lipid bilayer consisting of 512 D6PC molecules. Initiated from a smaller 128-lipid DLPC equilibrated bilayer with trimmed tails. Pore spontaneously form during the simulation.

Hen egg-white lysozyme protein with GROMOS 54A7 in AMBER (replicate 1 of 3). Initial structure obtained from the Protein Data Bank (PDB). PDB ID: 1AKI, URL:...